GetTissueCoordinates: Get Tissue Coordinates

In satijalab/seurat: Tools for Single Cell Genomics

Get Tissue Coordinates

Description

Get Tissue Coordinates

Usage

## S3 method for class 'SlideSeq'
GetTissueCoordinates(object, ...)

## S3 method for class 'STARmap'
GetTissueCoordinates(object, qhulls = FALSE, ...)

## S3 method for class 'VisiumV1'
GetTissueCoordinates(
  object,
  scale = "lowres",
  cols = c("imagerow", "imagecol"),
  ...
)

## S3 method for class 'VisiumV2'
GetTissueCoordinates(object, scale = NULL, ...)

Arguments

object	An object
...	Arguments passed to other methods
qhulls	return qhulls instead of centroids
scale	A factor to scale the coordinates by; choose from: 'tissue', 'fiducial', 'hires', 'lowres', or NULL for no scaling
cols	Columns of tissue coordinates data.frame to pull

See Also

SeuratObject::GetTissueCoordinates

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.