ISpatialDimPlot: Visualize clusters spatially and interactively

In satijalab/seurat: Tools for Single Cell Genomics

Visualize clusters spatially and interactively

Description

Visualize clusters spatially and interactively

Usage

ISpatialDimPlot(
  object,
  image = NULL,
  image.scale = "lowres",
  group.by = NULL,
  alpha = c(0.3, 1)
)

Arguments

object	A Seurat object
image	Name of the image to use in the plot
image.scale	Choose the scale factor ("lowres"/"hires") to apply in order to matchthe plot with the specified 'image' - defaults to "lowres"
group.by	Name of meta.data column to group the data by
alpha	Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.