ISpatialFeaturePlot: Visualize features spatially and interactively

In satijalab/seurat: Tools for Single Cell Genomics

Visualize features spatially and interactively

Description

Visualize features spatially and interactively

Usage

ISpatialFeaturePlot(
  object,
  feature,
  image = NULL,
  image.scale = "lowres",
  slot = "data",
  alpha = c(0.1, 1)
)

Arguments

object	A Seurat object
feature	Feature to visualize
image	Name of the image to use in the plot
image.scale	Choose the scale factor ("lowres"/"hires") to apply in order to matchthe plot with the specified 'image' - defaults to "lowres"
slot	If plotting a feature, which data slot to pull from (counts, data, or scale.data)
alpha	Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.