LoadSTARmap: Load STARmap data

In satijalab/seurat: Tools for Single Cell Genomics

Load STARmap data

Description

Load STARmap data

Usage

LoadSTARmap(
  data.dir,
  counts.file = "cell_barcode_count.csv",
  gene.file = "genes.csv",
  qhull.file = "qhulls.tsv",
  centroid.file = "centroids.tsv",
  assay = "Spatial",
  image = "image"
)

Arguments

data.dir	location of data directory that contains the counts matrix, gene name, qhull, and centroid files.
counts.file	name of file containing the counts matrix (csv)
gene.file	name of file containing the gene names (csv)
qhull.file	name of file containing the hull coordinates (tsv)
centroid.file	name of file containing the centroid positions (tsv)
assay	Name of assay to associate spatial data to
image	Name of "image" object storing spatial coordinates

Value

A Seurat object

See Also

STARmap

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.