View source: R/dimensional_reduction.R
PCASigGenes | R Documentation |
Returns a set of genes, based on the JackStraw analysis, that have statistically significant associations with a set of PCs.
PCASigGenes(
object,
pcs.use,
pval.cut = 0.1,
use.full = FALSE,
max.per.pc = NULL
)
object |
Seurat object |
pcs.use |
PCS to use. |
pval.cut |
P-value cutoff |
use.full |
Use the full list of genes (from the projected PCA). Assumes
that |
max.per.pc |
Maximum number of genes to return per PC. Used to avoid genes from one PC dominating the entire analysis. |
A vector of genes whose p-values are statistically significant for at least one of the given PCs.
ProjectDim
JackStraw
data("pbmc_small")
PCASigGenes(pbmc_small, pcs.use = 1:2)
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