PolyDimPlot: Polygon DimPlot
In satijalab/seurat: Tools for Single Cell Genomics
View source: R/visualization.R
PolyDimPlot R Documentation
Polygon DimPlot
Description
Plot cells as polygons, rather than single points. Color cells by identity, or a categorical variable
in metadata
Usage
PolyDimPlot(
object,
group.by = NULL,
cells = NULL,
poly.data = "spatial",
flip.coords = FALSE
)
Arguments
object
Seurat object
group.by
A grouping variable present in the metadata. Default is to use the groupings present
in the current cell identities (Idents(object = object))
cells
Vector of cells to plot (default is all cells)
poly.data
Name of the polygon dataframe in the misc slot
flip.coords
Flip x and y coordinates
Value
Returns a ggplot object
satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.
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View source: R/visualization.R
| PolyDimPlot | R Documentation |
Polygon DimPlot
Description
Plot cells as polygons, rather than single points. Color cells by identity, or a categorical variable in metadata
Usage
PolyDimPlot(
object,
group.by = NULL,
cells = NULL,
poly.data = "spatial",
flip.coords = FALSE
)
Arguments
object |
Seurat object |
group.by |
A grouping variable present in the metadata. Default is to use the groupings present
in the current cell identities ( |
cells |
Vector of cells to plot (default is all cells) |
poly.data |
Name of the polygon dataframe in the misc slot |
flip.coords |
Flip x and y coordinates |
Value
Returns a ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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