ProjectDimReduc: Project query data to reference dimensional reduction

In satijalab/seurat: Tools for Single Cell Genomics

Project query data to reference dimensional reduction

Description

Project query data to reference dimensional reduction

Usage

ProjectDimReduc(
  query,
  reference,
  mode = c("pcaproject", "lsiproject"),
  reference.reduction,
  combine = FALSE,
  query.assay = NULL,
  reference.assay = NULL,
  features = NULL,
  do.scale = TRUE,
  reduction.name = NULL,
  reduction.key = NULL,
  verbose = TRUE
)

Arguments

query	Query object
reference	Reference object
mode	Projection mode name for projection pcaproject: PCA projection lsiproject: LSI projection
reference.reduction	Name of dimensional reduction in the reference object
combine	Determine if query and reference objects are combined
query.assay	Assay used for query object
reference.assay	Assay used for reference object
features	Features used for projection
do.scale	Determine if scale expression matrix in the pcaproject mode
reduction.name	dimensional reduction name, reference.reduction is used by default
reduction.key	dimensional reduction key, the key in reference.reduction is used by default
verbose	Print progress and message

Value

Returns a query-only or query-reference combined seurat object

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.