SCTResults: Get SCT results from an Assay

In satijalab/seurat: Tools for Single Cell Genomics

Get SCT results from an Assay

Description

Pull the SCTResults information from an SCTAssay object.

Usage

SCTResults(object, ...)

SCTResults(object, ...) <- value

## S3 method for class 'SCTModel'
SCTResults(object, slot, ...)

## S3 replacement method for class 'SCTModel'
SCTResults(object, slot, ...) <- value

## S3 method for class 'SCTAssay'
SCTResults(object, slot, model = NULL, ...)

## S3 replacement method for class 'SCTAssay'
SCTResults(object, slot, model = NULL, ...) <- value

## S3 method for class 'Seurat'
SCTResults(object, assay = "SCT", slot, model = NULL, ...)

Arguments

object	An object
...	Arguments passed to other methods (not used)
value	new data to set
slot	Which slot to pull the SCT results from
model	Name of SCModel to pull result from. Available names can be retrieved with levels.
assay	Assay in the Seurat object to pull from

Value

Returns the value present in the requested slot for the requested group. If group is not specified, returns a list of slot results for each group unless there is only one group present (in which case it just returns the slot directly).

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.