SubsetByBarcodeInflections: Subset a Seurat Object based on the Barcode Distribution...

In satijalab/seurat: Tools for Single Cell Genomics

Subset a Seurat Object based on the Barcode Distribution Inflection Points

Description

This convenience function subsets a Seurat object based on calculated inflection points.

Usage

SubsetByBarcodeInflections(object)

Arguments

object

Seurat object

Details

See [CalculateBarcodeInflections()] to calculate inflection points and [BarcodeInflectionsPlot()] to visualize and test inflection point calculations.

Value

Returns a subsetted Seurat object.

Author(s)

Robert A. Amezquita, [e-mail]

See Also

CalculateBarcodeInflections BarcodeInflectionsPlot

Examples

data("pbmc_small")
pbmc_small <- CalculateBarcodeInflections(
  object = pbmc_small,
  group.column = 'groups',
  threshold.low = 20,
  threshold.high = 30
)
SubsetByBarcodeInflections(object = pbmc_small)

satijalab/seurat documentation built on March 20, 2024, 8:41 p.m.