generics: GEVA Generic Methods

Description Usage Arguments Value Examples

Description

Exhaustive list of generic methods exported from GEVA. Use findMethods to retrieve the specific usages.

Usage

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inputvalues(object)

inputweights(object, normalized)

inputdata(object)

inputnames(object)

infolist(object, field, ...)

infolist(object) <- value

factors(object)

factors(object) <- value

classification.table(object)

classification.table(object) <- value

analysis.params(gobject)

featureTable(object)

featureTable(object) <- value

sv(object)

svattr(S, V)

elem.class(typedlist)

elem.class(typedlist) <- value

groupsets(object)

groupsets(object) <- value

groups(object)

scores(object, group)

centroids(object)

offsets(object)

sv.scores(object)

qindexes(object)

qareasizes(object)

qcount(object)

quantiles(object)

quantiles.method(object)

group.rels(object)

cluster.method(object)

results.table(gres)

sv.data(object)

variation(object, ...)

get.summary.method(x)

get.variation.method(x)

get.distance.method(x)

as.SVTable(x, ...)

Arguments

object, x, gobject

Primary object. See the documentation from each class for specific usages

normalized

logical, whether to return values in the normalized scale

field

When used with a information list, returns the information entry with the corresponding name

...

Additional parameters. If used with an imported S3 method, passes the arguments to the default vector, matrix or data.frame implementation

value

The value to be assigned

S

Vector to construct the S slot

V

Vector to construct the V slot

typedlist

A TypedList object

group

Character to filter the returned groups. Omit it to return all groups

gres

A GEVAResults objec

Value

See the specific usages for each method.

Examples

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# Returing analysis parameters from an object
gsummary <- geva.summarize(geva.ideal.example(),
                           summary.method="mean",
                           variation.method="sd")
anpars <- analysis.params(gsummary)
print(anpars)
# $summary.method
# [1] "mean"
# $variation.method
# [1] "sd"

sbcblab/geva documentation built on March 15, 2021, 10:08 p.m.