Files in sbcblab/geva
Gene Expression Variation Analysis (GEVA)
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/asserts.R
R/c_GEVACluster.R
R/c_GEVAGroupSet.R
R/c_GEVAGroupedSummary.R
R/c_GEVAInput.R
R/c_GEVAQuantiles.R
R/c_GEVAQuantilesAdjusted.R
R/c_GEVAResults.R
R/c_GEVASummary.R
R/c_SVAttribute.R
R/c_SVTable.R
R/c_TypedList.R
R/callhelpers.R
R/classhelpers.R
R/clusteringbase.R
R/dclustering.R
R/dochelpers.R
R/factoring.R
R/finalize.R
R/funhelpers.R
R/generics.R
R/geva-package.R
R/hclustering.R
R/idealtesting.R
R/input.R
R/linq.R
R/matrixhelpers.R
R/plotting.R
R/printhelpers.R
R/quantiles.R
R/scoremerge.R
R/statmath.R
R/stringhelpers.R
R/summarization.R
R/usecasechecks.R
R/vectorhelpers.R
README.md
inst/doc/README.md
inst/doc/README_files/figure-gfm/plot-geva-cluster-1.png
inst/doc/README_files/figure-gfm/plot-geva-cluster-grouped-1.png
inst/doc/README_files/figure-gfm/plot-geva-quantiles-1-1.png
inst/doc/README_files/figure-gfm/plot-geva-quantiles-2-1.png
inst/doc/README_files/figure-gfm/plot-geva-results-1.png
inst/doc/README_files/figure-gfm/plot-geva-summary-1.png
man/GEVACluster-class.Rd
man/GEVAGroupSet-class.Rd
man/GEVAGroupedSummary-class.Rd
man/GEVAInput-class.Rd
man/GEVAQuantiles-class.Rd
man/GEVAQuantilesAdjusted-class.Rd
man/GEVAResults-class.Rd
man/GEVASummary-class.Rd
man/SVAttribute-class.Rd
man/SVTable-class.Rd
man/TypedList-class.Rd
man/generics.Rd
man/geva-package.Rd
man/geva.cluster.Rd
man/geva.dcluster.Rd
man/geva.finalize.Rd
man/geva.hcluster.Rd
man/geva.ideal.example.Rd
man/geva.input.correct.Rd
man/geva.merge.input.Rd
man/geva.quantiles.Rd
man/geva.quick.Rd
man/geva.summarize.Rd
man/top.genes.Rd
tests/testthat.R
tests/testthat/helper_randomness.R
tests/testthat/test_finalize.R
tests/testthat/test_groupsets.R
tests/testthat/test_input.R
tests/testthat/test_summarize.R
vignettes/.gitignore
vignettes/geva.Rmd
vignettes/references.bib
