geva.ideal.example: GEVA "Ideal" Example for Package Testing

In sbcblab/geva: Gene Expression Variation Analysis (GEVA)

Description

Generates a random example of GEVAInput object that simulates an ideal analysis dataset. Used for testing purposes only.

Usage

geva.ideal.example(probecount = 10000, nfactors = 3, colsperfactor = 3)

Arguments

probecount	integer, number of probes (i.e., table rows)
nfactors	integer, number of factors (e.g., experimental groups)
colsperfactor	integer, number of columns (e.g., experiments) per factor

Value

A GEVAInput object. The included tables are composed by probecount rows and nfactors * colsperfactor columns

See Also

geva.summarize

Examples

## "Ideal" input example
ginput <- geva.ideal.example()     # Generates a random example
gsummary <- geva.summarize(ginput) # Summarizes the generated data
plot(gsummary)                     # Plots the summarized data

sbcblab/geva documentation built on March 15, 2021, 10:08 p.m.