BCCSclassifier-package: Breast Cancer Consensus Subtypes Classification Package

In sbuechler/BCCSclassifier: Breast Cancer Consensus Subtype Classifier

Description

A package for computing the Breast Cancer Consensus Subtypes from whole-transcriptome data using the multi-kTSP method. For details, please see the vignette: browseVignettes(package = "BCCSclassifier")

Top-level BCCSclassifier functions

predict_bccs predicts the subtype of each sample with respect to one of three models: all breast cancer samples (erposneg), estrogen-receptor positive samples (erpos), or estrogen-receptor negative samples (erneg).

predict_bccs_frequency reports, for each sample and subtype, the fraction of kTSP models in the family that predict the sample is in that subtype.

Author(s)

Maintainer: Steven Buechler [e-mail] (ORCID)

Authors:

• Christina Horr [e-mail] (ORCID)

See Also

Useful links:

• Report bugs at https://github.com/sbuechler/BCCSclassifier/issues

sbuechler/BCCSclassifier documentation built on Dec. 22, 2021, 10:19 p.m.