bccs_classifier_genes: BCCS Classifier Genes Dataset
In sbuechler/BCCSclassifier: Breast Cancer Consensus Subtype Classifier
Description
The dataset bccs_classifier_genes is a tibble (data.frame) with one record
for each of the 430 genes used in the Multi-kTSP models presented here.
This data.frame can be used to create the expression matrix needed for
BCCS classification from whole-transcriptome datasets created with various
technologies.
Usage
1
Format
A tibble with 430 records and the following columns.
- SYMBOL
<chr> gene symbol
- ENTREZID
<chr> ENTREZID of the gene
- affy_feature
<chr> preferred Affymetrix hgu133a probe to
represent the gene
- illumina_feature
<chr> preferred IlluminaHuman v3 probe to
represent the gene
- ensembl_gene
<chr> Ensembl format gene identifier
To create the needed expression matrix from, e.g., an Affymetrix
expression dataset, the features should be restricted to the probes in the
affy_feature column, row names set to the corresponding SYMBOL
and column names set to the sample identifiers.
sbuechler/BCCSclassifier documentation built on Dec. 22, 2021, 10:19 p.m.
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Description
The dataset bccs_classifier_genes is a tibble (data.frame) with one record
for each of the 430 genes used in the Multi-kTSP models presented here.
This data.frame can be used to create the expression matrix needed for
BCCS classification from whole-transcriptome datasets created with various
technologies.
Usage
1 |
Format
A tibble with 430 records and the following columns.
- SYMBOL
<chr> gene symbol
- ENTREZID
<chr> ENTREZID of the gene
- affy_feature
<chr> preferred Affymetrix hgu133a probe to represent the gene
- illumina_feature
<chr> preferred IlluminaHuman v3 probe to represent the gene
- ensembl_gene
<chr> Ensembl format gene identifier
To create the needed expression matrix from, e.g., an Affymetrix
expression dataset, the features should be restricted to the probes in the
affy_feature column, row names set to the corresponding SYMBOL
and column names set to the sample identifiers.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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