MPred_erneg: Multi-kTSP model objects

In sbuechler/BCCSclassifier: Breast Cancer Consensus Subtype Classifier

Description

Classification of breast cancer into BCCS subtypes uses Multi-kTSP models, introduced in citation.

Usage

MPred_erneg

Format

A Multi-kTSP model is coded in R as what we call an MPred object. An MPred object is a large list, each component of which is a kTSP model. A kTSP model is itself a list, each component of which is an object of class ktspair. The ktspair object tests, for a particular pair of possible subtypes, whether a sample is more likely to be in one subtype or the other. The kTSP model includes a component for each possible pair of subtypes.

The BCCSclassifier package includes three Multi-kTSP models:

MPred_erposneg

For classifying breast cancer samples into one of BCS1-5

MPred_erpos

For classifying ER+ breast cancer samples into one of PCS1-4

MPred_erneg

For classifying ER- breast cancer samples into one of NCS1-3

sbuechler/BCCSclassifier documentation built on Dec. 22, 2021, 10:19 p.m.