filter_mpred_by_genes: Filter the multi-kTSP family by genes in the expression...
In sbuechler/BCCSclassifier: Breast Cancer Consensus Subtype Classifier
View source: R/filter_by_genes.R
Description
This function returns a multi-kTSP model containing only those kTSP
models whose genes are all found in the expression data. BCCS prediction
proceeds using only this subfamily.
Usage
1
filter_mpred_by_genes(MP, dat)
Arguments
MP
A multi-kTSP object, that is one of MPred_erposneg,
MPred_erpos, MPred_erneg
dat
An object of class matrix with samples as column names and gene symbols
as row names, and entries the corresponding expression levels. The included tibble
bccs_classifier_genes contains the gene symbols and ENTREZIDs used in the
BCCSclassifier models, along with Affymetrix (hgu133a) and Illumina
(illuminaHuman v3) probes that can be used to represent the associated genes.
Expression values must not be scaled or median-centered.
sbuechler/BCCSclassifier documentation built on Dec. 22, 2021, 10:19 p.m.
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View source: R/filter_by_genes.R
Description
This function returns a multi-kTSP model containing only those kTSP models whose genes are all found in the expression data. BCCS prediction proceeds using only this subfamily.
Usage
1 | filter_mpred_by_genes(MP, dat)
|
Arguments
MP |
A multi-kTSP object, that is one of |
dat |
An object of class matrix with samples as column names and gene symbols
as row names, and entries the corresponding expression levels. The included tibble
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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