plot_heatmap: Plot heatmap of gene expression by group

In scfurl/m3addon: This package adds to the popular "monocle3"

Description

You can figure it out

Usage

plot_heatmap(
  cds,
  markers,
  sample_cell_num = NULL,
  group_by = "Cluster",
  show_rownames = TRUE,
  gene_name_size = 8,
  scale_max = 3,
  col_low = "cyan",
  col_mid = "black",
  col_high = "red",
  scale_min = -3,
  minimal_cluster_fraction = NULL,
  return_heatmap = FALSE,
  cluster_row = T,
  cluster_col = F,
  verbose = FALSE,
  method = "ggplot",
  ...
)

Arguments

cds	Input cell_data_set object.

scfurl/m3addon documentation built on Aug. 9, 2021, 5:30 p.m.