plot_genes_violin: Plot violin plot of gene expression by group

In scfurl/m3addon: This package adds to the popular "monocle3"

Description

You can figure it out

Usage

plot_genes_violin(
  cds_subset,
  grouping = "Cluster",
  min_expr = 0.1,
  scale_y = NULL,
  cell_size = 0.75,
  nrow = NULL,
  ncol = 1,
  panel_order = NULL,
  color_by = NULL,
  remove_zeros = T,
  plot_trend = F,
  label_by_short_name = TRUE,
  relative_expr = TRUE,
  lognorm = TRUE,
  noise = FALSE,
  adjust = 2,
  scale = "width",
  jitter = FALSE,
  trim = FALSE,
  jitter_alpha = 0.3,
  round = FALSE,
  jitterzeros = FALSE,
  jitter_width = 0.05,
  jitter_height = 0,
  box_color = "red",
  violin_alpha = 1,
  boxplot = F,
  bwidth = 0.3,
  bcolor = "white"
)

Arguments

cds	Input cell_data_set object.

scfurl/m3addon documentation built on Aug. 9, 2021, 5:30 p.m.