red_dim_plot: Reduced Dimensionality Plot
In scfurl/m3addon: This package adds to the popular "monocle3"

Description Usage Arguments Value References

Adds an icon to the lower left hand corner of a plot indicating reducted dimensionality method used

red_dim_plot(
  plot,
  method = "UMAP",
  size = 20,
  ICON_DIR = system.file("icons", package = "m3addon"),
  correction_x = 0,
  correction_y = 0
)

`plot`	A ggplot2 object
`method`	method indicating which icon to use. Currently 'tSNE', 'PCA', and 'UMAP' supported
`correction_x,`	integer to offset icon in x axis
`correction_y,`	integer to offset icon in y axis
`widths`	A vector of length 2 specifying the size of the plot grid and legend grid, respectively.

grid arranged plot using split_plot function

Puram, S. V. et al. Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer. Cell 171, 1611.e1–1611.e24 (2017).

scfurl/m3addon documentation built on Aug. 9, 2021, 5:30 p.m.