Man pages for scfurl/viewmaster
This package aims annotate scRNAseq data according to a reference
| add_meta_data_cds | Add colData (aka pData) to a cell_data_set |
| calculate_gene_dispersion | Calculate dispersion genes in a cell_data_set object |
| check_input | check_input helper |
| cluster_LSI | Cluster LSI |
| cluster_specific | Find Cluster specific genes quickly |
| common_features | Finds common features in a list of cds objects |
| common_variant_genes | Common Variant Genes |
| detect_genes | Detects genes above minimum threshold. |
| estimate_corrected_score | Calculates geneset scores (corrected) |
| estimate_score | Calculates geneset scores using totals |
| extract_data | Extract data using a set of features |
| files3_prep | Files3 prep - find cellranger data files (matrix.mtx,... |
| find_partitions | Finds partitions akin to Monocle3 FindPartition Function |
| franken | Franken |
| get_assay | get_assay helper |
| GMT_to_list | Convert a GMT File to a ragged list of genes |
| groupSums | Helper function for summing sparse matrix groups |
| iterative_LSI | Iterative LSI |
| liftover_projection | Liftover projection |
| load_cellranger_data | Make monocle3 cell_data_set using cellranger h5 Depracated -... |
| load_STARsolo_data | Make monocle3 cell_data_set using STARsolo |
| monocle3_to_seurat | Monocle3 to Seurat |
| plot_geneset | Plot geneset scores as cells |
| plot_grouped_geneset | Plot geneset scores as summary plot |
| plot_projection | Plot a projection |
| project_data | Project data from one object into the UMAP embedding a single... |
| projectLSI | Project LSI Function |
| pseudo_singlets | Pseudo-singlets |
| reduce_dimension | Compute a projection of a cell_data_set object into a lower... |
| safe_subset | safe_subset helper |
| scrublet | Scrublet |
| select_genes | Select genes in a cell_data_set for dimensionality reduction |
| seurat_to_monocle3 | Seurat to Monocle3 |
| sfc | Make colors |
| sparseRowVariances | Helper function for summing sparse matrix groups |
| tf_idf_transform | Performs TF-IDF transformation on a cell_data_set |
| tf_idf_transform_v2 | Performs TF-IDF transformation on a cell_data_set v2 |
| viewmaster | viewmaster |
| viewmaster-package | This package aims annotate scRNAseq data according to a... |
