find_partitions: Finds partitions akin to Monocle3 FindPartition Function

In scfurl/viewmaster: This package aims annotate scRNAseq data according to a reference

Finds partitions akin to Monocle3 FindPartition Function

Description

Stated differently, low cluster resolution

Usage

find_partitions(
  obj = seurat,
  method = "louvain",
  k = 20,
  reduction = "pca",
  dims = NULL,
  weight = F,
  num_iter = 1,
  resolution_parameter = NULL,
  random_seed = 2020,
  verbose = T,
  partition_q_value = 0.05
)

Arguments

obj	Input seurat object.
method	Louvain or Leiden
k	nearest number k
reduction	reduction to find partitions of
dims	number of dimensions
num_iter	Number of iterations (leiden only); Default is 1.
resolution_parameter	leiden only
random_seed	seed default 2020
verbose	Default True
partition_q_value	Louvain only - sets resolution

scfurl/viewmaster documentation built on Nov. 22, 2022, 2:59 p.m.