viewmaster: viewmaster

In scfurl/viewmaster: This package aims annotate scRNAseq data according to a reference

viewmaster

Description

see single cell datasets through different lenses

ip

Usage

viewmaster(
  query_cds,
  ref_cds,
  ref_celldata_col = "celltype",
  query_celldata_col = NULL,
  FUNC = c("naive_bayes", "neural_network", "bagging", "softmax_regression",
    "logistic_regression", "deep_belief_nn", "perceptron"),
  selected_genes = NULL,
  train_frac = 0.8,
  tf_idf = F,
  hidden_layers = c(500, 100),
  learning_rate = 2,
  batch_size = 100,
  max_epochs = 250,
  max_error = 0.5,
  lambda = 1,
  iterations = 1000,
  LSImethod = 1,
  verbose = T,
  threshold = NULL
)

Arguments

query_cds	cds to query
ref_cds	reference cds

Value

a cell_data_set object or a list of items if unfiltered data is returned (see unfiltered)

Author(s)

scfurl

scfurl/viewmaster documentation built on Nov. 22, 2022, 2:59 p.m.