cluster_specific: Find Cluster specific genes quickly

In scfurl/viewmaster: This package aims annotate scRNAseq data according to a reference

Find Cluster specific genes quickly

Description

Find Cluster specific genes quickly

Usage

cluster_specific(
  cds,
  column = "cluster",
  verbose = T,
  threads = 1,
  run_glm = F,
  min_expression = 0.2,
  top_n = 500,
  symbol_id = "gene_id"
)

Arguments

cds	cell_data_set object with a reduced dimension matrix (currently LSI supported) as specified in reduced_dim argument and a model used to create a low dimensional embedding
column	a SummarizedExperiment type object (cell_data_set currently supported) to be projected using the models contained in the projector
verbose	A boolean value indicating whether to use verbose output during execution of this function. Can be set to FALSE for a cleaner output.
threads	The number of threads used for parallel execution

scfurl/viewmaster documentation built on Nov. 22, 2022, 2:59 p.m.