plot_projection: Plot a projection

In scfurl/viewmaster: This package aims annotate scRNAseq data according to a reference

Plot a projection

Description

This function plots a projection object created using the project_data function

Usage

plot_projection(
  projection,
  projector,
  projectee,
  projector_col = NULL,
  projectee_col = NULL
)

Arguments

projection	projection object created by project_data function
projector	cell_data_set object with a reduced dimension matrix (currently LSI supported) as specified in reduced_dim argument and a model used to create a low dimensional embedding
projectee	a SummarizedExperiment type object (cell_data_set currently supported) to be projected using the models contained in the projector
projector_col	column name of projector to color cells by using nearest neighbor
projectee_col	column name of projectee to color cells by
colors	color palatte of projectee_col cells

scfurl/viewmaster documentation built on Nov. 22, 2022, 2:59 p.m.