README.md

In schyen/somefxns: Generic Tools to Help with Analysis

somefxns

R package. Collection of custom functions that I commonly apply.

The following functions are used for analyzing MIC assays for measuring antibiotic levels in fecal water importVictor checkCtrl plateAdjust growthCurve survivalCurve calcSurvival * calcabx

The following functions are used for data visualization perform_pca pca_score pca_loading pca_biplot * generate_heatmap

The following functions are used for analyzing Sanger sequences (first iteration of isolationWorkflow) abif_fasta parse_blast

Other useful functions * genbymultiple (generate number sequence by multiples. Useful for analysis of dilution series)

Install Instructions:

# if devtools package not yet installed, install devtools first
install_packages('devtools')

# loading devtools library
library(devtools)

# download and install isolationWorkflow
install_github("schyen/somefxns")

# load somefxns package
library('somefxns')

schyen/somefxns documentation built on Aug. 6, 2019, 2:26 p.m.