plateAdjust: plateAdjust

In schyen/somefxns: Generic Tools to Help with Analysis

Description

normalized absorbance values by adjusting to blank

Usage

plateAdjust(plateDF, metadata, well_include = NULL, blank_by = "row",
  blank_label = "blank")

Arguments

plateDF	dataframe. first spreadsheet of victor file
metadata	dataframe. well metadata. must have columns: Well, platerow, platecol, strain, curveID, welltype, media, abx, wellconc
well_include	string or vector of string. Default NULL. Which wells to include in analysis
blank_by	c('row','col', 'T0'). Default 'row'. Sets orientation of blanks. 'row' means blanks are in the same row as corresponding wells 'col' means blanks are in the same column as corresponding wells 'timepoint' means blank by reading at time 0 (aka repeat 1)
blank_label	string. Default 'blank'. How are blanks identified in metadata

Value

full dataframe of with metadata, absorbance, adjusted absorbance in one dataframe

schyen/somefxns documentation built on Aug. 6, 2019, 2:26 p.m.