Files in scottdaniel/bacphene
Imports Bacterial Phenotype Data Into R
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/bacdive_extract.R
R/bacdive_strain_access.R
R/data.R
R/manual_curation.R
README.Rmd
README.md
bacphene.Rproj
data-raw/.gitignore
data-raw/IJSEM/IJSEM_pheno_db_v1.0.txt
data-raw/IJSEM/README.txt
data-raw/Shen2021.csv
data-raw/abx_res_sens_bacdive_20211027.csv
data-raw/download_from_bacdive.Rmd
data-raw/full_list_of_bacteria_from_bacdive_20211027.csv
data-raw/genera_0831.txt
data-raw/gram_stain_bacdive_20211027.csv
data-raw/oxygen_tolerance_bacdive_20211027.csv
data-raw/species_0831.txt
data-raw/urease_activity_bacdive_20211027.csv
data/Shen2021.rda
data/bacdive_abx.rda
data/bacdive_antibiogram.rda
data/bacdive_enzymes.rda
data/bacdive_morphology.rda
data/bacdive_oxygen.rda
data/bacdive_phenotypes.rda
data/bacdive_susceptibility.rda
data/ijsem.rda
data/manual_curation_genera.rda
data/manual_curation_species.rda
man/Shen2021.Rd
man/bacdive_abx.Rd
man/bacdive_antibiogram.Rd
man/bacdive_enzymes.Rd
man/bacdive_morphology.Rd
man/bacdive_oxygen.Rd
man/bacdive_phenotypes.Rd
man/bacdive_susceptibility.Rd
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-12-1.png
man/figures/README-unnamed-chunk-14-1.png
man/figures/README-unnamed-chunk-16-1.png
man/figures/README-unnamed-chunk-17-1.png
man/figures/README-unnamed-chunk-19-1.png
man/figures/README-unnamed-chunk-5-1.png
man/figures/README-unnamed-chunk-9-1.png
man/getAbx.Rd
man/getAbxSingle.Rd
man/getAntibiogram.Rd
man/getAntibiogramSingle.Rd
man/getBacDiveAccess.Rd
man/getEnzymes.Rd
man/getEnzymesSingle.Rd
man/getMorphology.Rd
man/getMorphologySingle.Rd
man/getOxygen.Rd
man/getOxygenSingle.Rd
man/getPhenotypes.Rd
man/getSimplifiedAbx.Rd
man/getStrainLocal.Rd
man/getStrains.Rd
tests/testthat.R
tests/testthat/test-bacphene.R
tests/testthat/test_data.rda
