bacdive_oxygen: Oxygen tolerance data from bacdive.org. Produced by...

In scottdaniel/bacphene: Imports Bacterial Phenotype Data Into R

Oxygen tolerance data from bacdive.org. Produced by getOxygen.

Description

Oxygen tolerance data from bacdive.org. Produced by getOxygen.

Usage

bacdive_oxygen

Format

A data frame with the following columns:

'@ref'

The literature reference in the bacdive database.

'oxygen tolerance'

The oxygen tolerance of the strain. Multiple values including "aerobe", "facultative anaerobe", and "obligate anaerobe", etc. NA means the status is unknown or variable.

ID

bacdive ID of strain.

taxon

The name of the taxon.

rank

The rank of the taxon.

type_strain

Whether or not the strain is the type strain for the species.

'doi/url'

DOI (Digital Object Identifier) for the reference.

Note

Data frame also has the attribute "date_downloaded" for when the data was downloaded from bacdive.org.

scottdaniel/bacphene documentation built on March 25, 2023, 12:51 p.m.