Man pages for scottdaniel/bacphene
Imports Bacterial Phenotype Data Into R
| bacdive_abx | Antibiotics data from bacdive.org that is _not_ in the... |
| bacdive_antibiogram | Antibiotics data from bacdive.org that is in the antibiogram... |
| bacdive_enzymes | Enzyme activity data from bacdive.org. Produced by... |
| bacdive_morphology | Cell morphology data from bacdive.org. Produced by... |
| bacdive_oxygen | Oxygen tolerance data from bacdive.org. Produced by... |
| bacdive_phenotypes | Phenotype data of bacterial type strains from bacdive.org.... |
| bacdive_susceptibility | Antibiotic susceptibility data from bacdive that combines and... |
| getAbx | Get the regular antibiotic susceptibility / resistance... |
| getAbxSingle | Get the regular antibiotic susceptibility / resistance... |
| getAntibiogram | Get the antibiogram susceptibility / resistance information... |
| getAntibiogramSingle | Get the antibiogram susceptibility / resistance information... |
| getBacDiveAccess | Opens a portal to the world of BacDive |
| getEnzymes | Extracts enzyme data from a bacdive list |
| getEnzymesSingle | Extracts enzyme data from a bacdive entry |
| getMorphology | Extracts cell morphology data from a bacdive list |
| getMorphologySingle | Extracts cell morphology data from a single entry in a... |
| getOxygen | Extracts oxygen tolerance data from a bacdive list |
| getOxygenSingle | Extracts oxygen tolerance data from a single entry in a... |
| getPhenotypes | Combined oxygen tolerance and gram stain data for use with... |
| getSimplifiedAbx | Simplify the full antibiotic susceptibility / resistance... |
| getStrainLocal | Gets a single strain of a species |
| getStrains | Downloads BacDive strains from a list of supplied ID's |
| Shen2021 | Taxonomic count data from shotgun metagenomics |
