plot.MCMCc4photo: Plotting function for MCMCc4photo objects
In serbinsh/biocro: Simulation of Energycane and Sugarcane

Description Usage Arguments Details See Also

By default it prints the trace of the four parameters being estimated by the MCMCc4photo function. As an option the density can be plotted.

  plot.MCMCc4photo(x, x2 = NULL, x3 = NULL,
    plot.kind = c("trace", "density"), type = c("l", "p"),
    burnin = 1, cols = c("blue", "green", "purple"),
    prior = FALSE, pcol = "black", ...)

`x`	`MCMCc4photo` object.
`x2`	optional additional `MCMCc4photo` object.
`x3`	optional additional `MCMCc4photo` object.
`plot.kind`	'trace' plots the iteration history and 'density' plots the kernel density.
`type`	only the options for line and point are offered.
`burnin`	this will remove part of the chain that can be considered burn-in period. The plots will no include this part.
`cols`	Argument to pass colors to the line or points being plotted.
`prior`	Whether to plot the prior density. It only works when x2 = NULL and x3 = NULL. Default is FALSE.
`pcol`	Color used for plotting the prior density.
`...`	Optional arguments.