Scarab: A modified Hymenoptera Anatomy Ontology (HAO) to accommodate...
In sergeitarasov/ontoFAST: Interactive Annotation of Characters with Biological Ontologies
Scarab R Documentation
A modified Hymenoptera Anatomy Ontology (HAO) to accommodate anatomy of dung beetles
Description
Anatomy ontology of Hymenoptera + Dung beetles. This ontology was imported into R using get_OBO() function from ontologyIndex packages (see the examples). The added terms for dung beetle anatomy have prefix "SCR".
Usage
Scarab
Format
List containing various ontological relationships and terms.
References
Yoder MJ, Mikó I, Seltmann KC, Bertone MA, Deans AR. 2010. A Gross Anatomy Ontology for Hymenoptera. PLoS ONE 5 (12): e15991.
(Read)
Hymenoptera Anatomy Ontology Portal
Examples
data(Scarab)
#you can also parse the original .obo file
get_OBO(system.file("data_onto", "HAO4scarabs.obo", package = "ontoFAST"),
extract_tags="everything", propagate_relationships = c("BFO:0000050", "is_a"))
sergeitarasov/ontoFAST documentation built on Aug. 5, 2022, 4:20 a.m.
R Package Documentation
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| Scarab | R Documentation |
A modified Hymenoptera Anatomy Ontology (HAO) to accommodate anatomy of dung beetles
Description
Anatomy ontology of Hymenoptera + Dung beetles. This ontology was imported into R using get_OBO() function from ontologyIndex packages (see the examples). The added terms for dung beetle anatomy have prefix "SCR".
Usage
Scarab
Format
List containing various ontological relationships and terms.
References
Yoder MJ, Mikó I, Seltmann KC, Bertone MA, Deans AR. 2010. A Gross Anatomy Ontology for Hymenoptera. PLoS ONE 5 (12): e15991. (Read)
Hymenoptera Anatomy Ontology Portal
Examples
data(Scarab)
#you can also parse the original .obo file
get_OBO(system.file("data_onto", "HAO4scarabs.obo", package = "ontoFAST"),
extract_tags="everything", propagate_relationships = c("BFO:0000050", "is_a"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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