get_descendants_chars: Get characters that descendants of selected ontology term

In sergeitarasov/ontoFAST: Interactive Annotation of Characters with Biological Ontologies

Get characters that descendants of selected ontology term

Description

Returns all characters located (associated) with given ontology term(s)

Usage

get_descendants_chars(ontology, annotations = "auto", terms, ...)

Arguments

ontology	ontology_index object.
annotations	which annotations to use: "auto" means automatic annotations, "manual" means manual ones. Alternatively, any othe list element containing annotations can be specified.
terms	IDs of ontology terms for which descendants are queried.
...	other parameters for ontologyIndex::get_descendants() function

Value

The vector of character IDs.

Examples

data(HAO)
ontology<-HAO
ontology$terms_selected_id<-list(`CHAR:1`=c("HAO:0000653"), `CHAR:2`=c("HAO:0000653"))
get_descendants_chars(ontology, annotations="manual", "HAO:0000653")

sergeitarasov/ontoFAST documentation built on Aug. 5, 2022, 4:20 a.m.