runOntoFast | R Documentation |
This function runs ontoFAST in interactive mode. Interactive mode allows character annotation and navigation through ontology network.
runOntoFast( is_a = c("is_a"), part_of = c("BFO:0000050"), nchar = "all", show.chars = TRUE, shiny_in = "shiny_in", file2save = "OntoFAST_shiny_in.RData", ... )
is_a |
term for is_a relationships |
part_of |
term for part_of relationships |
nchar |
number of characters to show |
show.chars |
shows character statements |
shiny_in |
a name of ontology (shiny_in) object in "ontofast" enviroment |
file2save |
a name of the file to which shiny_in object is saved in interactive mode |
... |
other arguments |
runs ontoFAST interactively using Shiny.
data(Sharkey_2011) data(HAO) hao_obo<-onto_process(HAO, Sharkey_2011[,1], do.annot = FALSE) ontofast <- new.env(parent = emptyenv()) ontofast$shiny_in <- make_shiny_in(hao_obo) runOntoFast(is_a = c("is_a"), part_of = c("BFO:0000050"), shiny_in="shiny_in" )
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