clean: clean

In seriph78/COTAN_stable: COexpression Tables ANalysis

Description

Main function that can be used to check and clean the dataset. It also produce (using the function fun_linear) and store the estimators for nu and lambda. It also fill the raw.norm (raw / nu) and n_cell (the initial number of cells in the dataset)

Usage

clean(object)

## S4 method for signature 'scCOTAN'
clean(object)

Arguments

object

COTAN object

Value

a list of objects containing: "cl1" is the first cell cluster, "cl2" is the second cell cluster, "pca.cell.2" is a ggplot2 cell pca plot, "object" is the COTAN object with saved the estimated lambda and mu, "mu_estimator", "D" "pca_cells" pca numeric data.

Examples

data("ERCC.cotan")
ttm = clean(ERCC.cotan)

seriph78/COTAN_stable documentation built on Dec. 23, 2021, 12:19 a.m.