initRaw: initRaw

In seriph78/COTAN_stable: COexpression Tables ANalysis

Description

It starts to fill some fields of cotan object.

Usage

initRaw(object, GEO, sc.method = "10X", cond)

## S4 method for signature 'scCOTAN'
initRaw(object, GEO, sc.method = "10X", cond)

Arguments

object	the dataframe containing the raw data: it should be a data.frame, not a matrix.
GEO	a code reporting the GEO identification or other specific dataset code
sc.method	a string reporting the method used for the sequencing
cond	a string reporting the specific sample condition or time point

Value

A COTAN object to store all information

Examples

data("raw.dataset")
obj = new("scCOTAN", raw = raw)
obj = initRaw(obj, GEO="code" , sc.method="10X",cond = "mouse dataset")

seriph78/COTAN_stable documentation built on Dec. 23, 2021, 12:19 a.m.