example_antibody_data: Example antibody data

example_antibody_dataR Documentation

Example antibody data

Description

Example of the antibody data frame generated by simulate_data, with matching infection history in example_inf_hist

Usage

data(example_antibody_data)

Format

A data frame with 4800 rows (each corresponding to a unique antibody measurement) and 6 variables:

individual

index starting from 1 for the individual ID. This should be continuous from 1:n.

sample_time

time the serum sample was taken, matching the time resolution used in the overall model.

biomarker_id

ID of the biomarker being measured. Usually this would correspond to the time period in which an antigen was assumed to be circulating, e.g., an entry of 2015 would correspond to the variant assumed to be circulating throughout 2015.

biomarker_group

Group ID of the biomarker being measured. This will usually just be 1, but can be used where there are multiple biomarker types (not just antigens/targets) per sample. For example, this might represent antibody levels and avidity.

measurement

the antibody measurement for this biomarker ID at this sampling time.

repeat_number

where there are repeat measurements, gives the repeat number for this serum sample and strain measured.

population_group

group index of this individual, for example, corresponding to a study location.

birth

date of birth matching the time resolution of the model.

See Also

Other example_data: example_antigenic_map, example_inf_chain, example_inf_hist, example_par_tab, example_theta_chain


seroanalytics/serosolver documentation built on July 11, 2024, 4:41 p.m.