example_antigenic_map: Example antigenic map

In seroanalytics/serosolver: Inference Framework for Serological Data

Example antigenic map

Description

Example of the 2-dimensional antigenic map used through serosolver. This data frame specifies the antigenic coordinates for each pathogen/variant, with the assumption that only one representative variant circulates in each time period

Usage

data(example_antigenic_map)

Format

A data frame with 48 rows and 3 variables:

x_coord

x-coordinate for this entry in the 2D map

y_coord

y-coordinate for this entry in the 2D map

inf_times

circulation time of this entry. By default, this can be considered as the circulation year, though the logic extends to quarters, months etc

See Also

Other example_data: example_antibody_data, example_inf_chain, example_inf_hist, example_par_tab, example_theta_chain

seroanalytics/serosolver documentation built on April 10, 2024, 3:28 p.m.