example_antigenic_map: Example antigenic map

In seroanalytics/serosolver: Inference Framework for Serological Data

Example antigenic map

Description

Example of the 2-dimensional antigenic map used through serosolver. This data frame specifies the antigenic coordinates for each strain, with the assumption that only one representative strain circulates in each time period

Usage

data(example_antigenic_map)

Format

A data frame with 48 rows and 3 variables:

x_coord

x-coordinate for this entry in the 2D map

y_coord

y-coordinate for this entry in the 2D map

inf_times

circulation time of this entry. By default, this can be considered as the circulation year, though the logic extends to quarters, months etc

See Also

Other example_data: example_inf_chain, example_inf_hist, example_par_tab, example_theta_chain, example_titre_dat

seroanalytics/serosolver documentation built on April 24, 2023, 9:52 a.m.