Man pages for sgavril/equinizeR
Manage Equine Marker Gene Data
| cutadaptPrimers | Remove primers using cutadapt as per the DADA2 ITS workflow |
| filter_and_remove_synonyms | A function to remove all non-ITS2 sequences and change any... |
| filter_asv_tab | A function to filter the custom ASV table geenerated by the... |
| number_of_species_per_sample | A function to compute the number of species per sample in a... |
| presence_of_asvs_over_percentage | Presence of ASVs over a certain percentage This function... |
| read_asv_table | Read in ASV table output from DADA2 pipeline |
| run_dada2 | Runs a custom DADA2 workflow |
| writeHeaders | A function that writes headers for the filtered FASTA... |
