filter_and_remove_synonyms: A function to remove all non-ITS2 sequences and change any...
In sgavril/equinizeR: Manage Equine Marker Gene Data
Description
A function to remove all non-ITS2 sequences and change any synonyms, both specified by CSVs
Usage
1
2
filter_and_remove_synonyms(database_path, fasta_path, to_remove_path,
synonyms_path)
Arguments
database_path
Path of taxonomy database
fasta_path
The path of the DADA2 formatted reference taxonomy database
to_remove_path
Path of a CSV file containing names of sequences to remove
synonyms_path
Path of a CSV specifying horse parasite synonym and official Lichtenfels 2008 name
sgavril/equinizeR documentation built on June 15, 2019, 2:44 p.m.
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Description
A function to remove all non-ITS2 sequences and change any synonyms, both specified by CSVs
Usage
1 2 | filter_and_remove_synonyms(database_path, fasta_path, to_remove_path,
synonyms_path)
|
Arguments
database_path |
Path of taxonomy database |
fasta_path |
The path of the DADA2 formatted reference taxonomy database |
to_remove_path |
Path of a CSV file containing names of sequences to remove |
synonyms_path |
Path of a CSV specifying horse parasite synonym and official Lichtenfels 2008 name |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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