run_dada2: Runs a custom DADA2 workflow
In sgavril/equinizeR: Manage Equine Marker Gene Data

Runs a custom DADA2 workflow

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run_dada2(primerless_reads_directory, reference_taxonomy_database_path,
  overlap_mismatch_proportion = 0.015,
  taxonomy_confidence_threshold = 0)

`primerless_reads_directory`	The directory containing paired end reads with no primers
`reference_taxonomy_database_path`	The path of the desired reference taxonomy database
`overlap_mismatch_proportion`	A proportion for the number of allowed mismatches based on overlap length between paired reads
`taxonomy_confidence_threshold`	A percentage for the confidence threshold (default 0) for taxonomic assignment