link_idoc_metadata: Find the raw data for an experiment in an IDOC database The...

In shaliulab/idocr: Analyze traces created in the Individual Drosophila Optogenetics Conditioner (IDOC)

Find the raw data for an experiment in an IDOC database The found folder is saved as a new column of the metadata called idoc_folder metadata must be a data frame with columns:

• Files: the basename of the IDOC folder (without the parent folder)

Description

result_dir must be a directory with the following structure: One folder for every month whene at least one experiment was done. The folder is called YYYY-MM-idoc_data Inside the month folders, there must be one subfolder for every experiment group Example result_dir | |— 2022-01-idoc_data |— 2022-01-10_13-00-00 (FOO_STM) |— 2022-01-10_13-00-00 |— 2022-01-10_13-10-00 |— 2022-01-10_13-20-00 |— 2022-01-10_14-00-00 (BAR_STM) |— 2022-01-10_14-00-00 |— 2022-01-10_14-10-00 |— 2022-01-10_14-20-00 |— 2022-02-idoc_data |— 2022-02-12_13-00-00 (FOO) |— |— |— |— 2022-02-13_14-00-00 (BAR) |— |— |—

Usage

link_idoc_metadata(metadata, result_dir, verbose = TRUE)

shaliulab/idocr documentation built on June 1, 2025, 4:59 p.m.