API for shangguandong1996/FindIT2
find influential TF and Target based on multi-omics data
| Global functions | |
|---|---|
| ATAC_normCount | Man page |
| CCT | Source code |
| INT | Source code |
| RNADiff_LEC2_GR | Man page |
| RNA_normCount | Man page |
| Stouffer_method | Source code |
| TF_target_database | Man page |
| calcQvalue | Source code |
| calcRP_TFHit | Man page Source code |
| calcRP_coverage | Man page Source code |
| calcRP_region | Man page Source code |
| calc_jaccard | Source code |
| check_colnames | Source code |
| check_duplicated | Source code |
| check_parameter_length | Source code |
| check_peakGR | Source code |
| check_seqlevel | Source code |
| enhancerPromoterCor | Man page Source code |
| findIT_MARA | Man page Source code |
| findIT_TFHit | Man page Source code |
| findIT_TTPair | Man page Source code |
| findIT_enrichFisher | Man page Source code |
| findIT_enrichWilcox | Man page Source code |
| findIT_regionRP | Man page Source code |
| getAssocPairNumber | Man page Source code |
| integrate_ChIP_RNA | Man page Source code |
| integrate_replicates | Man page Source code |
| jaccard_findIT_TTpair | Man page Source code |
| jaccard_findIT_enrichFisher | Man page Source code |
| loadPeakFile | Man page Source code |
| mm_geneBound | Man page Source code |
| mm_geneScan | Man page Source code |
| mm_nearestGene | Man page Source code |
| peakGeneCor | Man page Source code |
| plot_annoDistance | Man page Source code |
| plot_peakGeneAlias_summary | Man page Source code |
| plot_peakGeneCor | Man page Source code |
| report_geneInfo | Source code |
| test_featureSet | Man page |
| test_geneSet | Man page |
