Files in shangguandong1996/FindIT2
find influential TF and Target based on multi-omics data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/calcRP.R
R/data.R
R/findIT_TTpair_enrichFisher_parse.R
R/find_influential_TF.R
R/integrateInfo.R
R/mmPeakAnno.R
R/mmPeakAnno_parse.R
R/peakGeneCor.R
R/peakGeneCor_parse.R
R/prepare.R
R/utils.R
README.md
data/ATAC_normCount.rda
data/RNADiff_LEC2_GR.rda
data/RNA_normCount.rda
data/TF_target_database.rda
data/test_featureSet.rda
data/test_geneSet.rda
inst/CITATION
inst/extdata/ATAC.bed.gz
inst/extdata/ChIP.bed.gz
inst/extdata/E50h_sampleChr5.bw
inst/extdata/TF_GR_database.bed.gz
man/ATAC_normCount.Rd
man/RNADiff_LEC2_GR.Rd
man/RNA_normCount.Rd
man/TF_target_database.Rd
man/calcRP_TFHit.Rd
man/calcRP_coverage.Rd
man/calcRP_region.Rd
man/enhancerPromoterCor.Rd
man/findIT_MARA.Rd
man/findIT_TFHit.Rd
man/findIT_TTPair.Rd
man/findIT_enrichFisher.Rd
man/findIT_enrichWilcox.Rd
man/findIT_regionRP.Rd
man/getAssocPairNumber.Rd
man/integrate_ChIP_RNA.Rd
man/integrate_replicates.Rd
man/jaccard_findIT_TTpair.Rd
man/jaccard_findIT_enrichFisher.Rd
man/loadPeakFile.Rd
man/mm_geneBound.Rd
man/mm_geneScan.Rd
man/mm_nearestGene.Rd
man/peakGeneCor.Rd
man/plot_annoDistance.Rd
man/plot_peakGeneAlias_summary.Rd
man/plot_peakGeneCor.Rd
man/test_featureSet.Rd
man/test_geneSet.Rd
tests/testthat.R
tests/testthat/test_calcRP.R
tests/testthat/test_findIT_TTpair_enrichFisher_parse.R
tests/testthat/test_find_influential_TF.R
tests/testthat/test_integrateInfo.R
tests/testthat/test_mmPeakAnno.R
tests/testthat/test_mmPeakAnno_parse.R
tests/testthat/test_peakGeneCor.R
tests/testthat/test_peakGeneCor_parse.R
tests/testthat/test_prepare.R
vignettes/.gitignore
vignettes/FindIT2.Rmd
vignettes/FindIT2.bib
