README.md

In shmohammadi86/ACTIONetExperiment: ACTIONetExperiment container object

ACTIONetExperiment (ACE) Package

ACTIONetExperiment is the extension of SummarizedExperiment class specifically designed to match the structure of Python AnnData objects. It was originally developed to accompany the ACTIONet R package, but functions as a stand-alone package for omics data storage and manipulation. ACTIONetExperiment objects can be used interchangeably with SummarizedExperiment or SingleCellExperiment objects in most packages.

Installation

Setting Up the Environment (Preinstallation)

For Linux Users

sudo apt install libhdf5-dev

For Mac Users

brew install hdf5

Installing ACTIONetExperiment

install.packages("devtools")
devtools::install_github("shmohammadi86/ACTIONetExperiment")

shmohammadi86/ACTIONetExperiment documentation built on Sept. 13, 2023, 8:55 p.m.