convert.ace.rownames: Translates rownames() of the 'ace' object for mouse and human...

In shmohammadi86/ACTIONetExperiment: ACTIONetExperiment container object

Translates rownames() of the 'ace' object for mouse and human datasets. A typical use-case is when input ids are in ENSEMBL format, but user is interested to work with gene symbols.

Description

Translates rownames() of the 'ace' object for mouse and human datasets. A typical use-case is when input ids are in ENSEMBL format, but user is interested to work with gene symbols.

Usage

convert.ace.rownames(ace, from = "ENSEMBL", to = "SYMBOL", species = "human")

Arguments

ace	Input 'ace' object
from	Source annotation (default='ENSEMBL')
to	Target annotation (default='SYMBOL')
species	Either 'mouse' or 'human' (default='human')

Value

'SingleCellExeriment' object with renamed rows

Examples

ace = import.ace.from.CDS(monocle_cds)

shmohammadi86/ACTIONetExperiment documentation built on Sept. 13, 2023, 8:55 p.m.