import.ace.from.10X: A simple wrapper to import data from a 10X experiment folder...

View source: R/io.R

import.ace.from.10XR Documentation

A simple wrapper to import data from a 10X experiment folder (v2 or v3) and constructs an 'SingleCellExeriment' object

Description

A simple wrapper to import data from a 10X experiment folder (v2 or v3) and constructs an 'SingleCellExeriment' object

Usage

import.ace.from.10X(input_path, version = 3, prefilter = FALSE, ...)

Arguments

input_path

Folder containing input files

version

2 or 3

prefilter

Whether to prefilter genes/cells based on the counts.mat

min.cell.frac.per.gene

Minimum fraction of cells capturing a gene for it to be retained, if prefilter=TRUE (default=0.005)

min.genes.per.cell

Minimum number of required captured genes per cell, if prefilter=TRUE (default=500)

Value

'SingleCellExeriment' object

Examples

ace = import.ace.from.10X(input_path, prefilter=TRUE, min_feats_per_cell = 500)

shmohammadi86/ACTIONetExperiment documentation built on Sept. 13, 2023, 8:55 p.m.