import.ace.from.table: Constructs an 'SingleCellExeriment' object from a full count...

In shmohammadi86/ACTIONetExperiment: ACTIONetExperiment container object

Constructs an 'SingleCellExeriment' object from a full count matrix file

Description

Constructs an 'SingleCellExeriment' object from a full count matrix file

Usage

import.ace.from.table(fname, sep = "\t", prefilter = FALSE, ...)

Arguments

fname	Full path to the count matrix file
sep	Column-separator used in count matrix file (default='\t')
prefilter	Whether to prefilter genes/cells based on the counts.mat
min.cell.frac.per.gene	Minimum fraction of cells capturing a gene for it to be retained, if prefilter=TRUE (default=0.005)
min.genes.per.cell	Minimum number of required captured genes per cell, if prefilter=TRUE (default=500)

Value

'SingleCellExeriment' object

Examples

ace = import.ace.from.table(file_name, prefilter=TRUE)

shmohammadi86/ACTIONetExperiment documentation built on Sept. 13, 2023, 8:55 p.m.