import.ace.from.table: Constructs an 'SingleCellExeriment' object from a full count...

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import.ace.from.tableR Documentation

Constructs an 'SingleCellExeriment' object from a full count matrix file

Description

Constructs an 'SingleCellExeriment' object from a full count matrix file

Usage

import.ace.from.table(fname, sep = "\t", prefilter = FALSE, ...)

Arguments

fname

Full path to the count matrix file

sep

Column-separator used in count matrix file (default='\t')

prefilter

Whether to prefilter genes/cells based on the counts.mat

min.cell.frac.per.gene

Minimum fraction of cells capturing a gene for it to be retained, if prefilter=TRUE (default=0.005)

min.genes.per.cell

Minimum number of required captured genes per cell, if prefilter=TRUE (default=500)

Value

'SingleCellExeriment' object

Examples

ace = import.ace.from.table(file_name, prefilter=TRUE)

shmohammadi86/ACTIONetExperiment documentation built on Sept. 13, 2023, 8:55 p.m.