Man pages for shmohammadi86/ACTIONetExperiment
ACTIONetExperiment container object
| ACTIONetExperiment | ACTIONet: Robust multi-resolution analysis of single-cell... |
| as.ACTIONetExperiment | Converts a SummarizedExperiment, RangedSummarizedExperiment,... |
| as.SingleCellExperiment | Converts an ACTIONetExperiment object to a... |
| as.SummarizedExperiment | Converts an ACTIONetExperiment method to a... |
| colEmbeddings | Get column embeddings |
| colEmbeddings-set | Set column embeddings |
| colMapMeta | Get colMapTypes |
| colMapMeta-set | Set colMapMeta |
| colMaps | Get colMaps |
| colMaps-set | Set colMaps |
| colMapTypes | Get colMapTypes |
| colMapTypes-set | Set colMapTypes |
| colNets | Get colNets |
| colNets-set | Set colNets |
| colReductions | Get column reductions |
| colReductions-set | Set column reductions |
| convert.ace.rownames | Translates rownames() of the 'ace' object for mouse and human... |
| import.ace.from.10X | A simple wrapper to import data from a 10X experiment folder... |
| import.ace.from.10X.generic | Imports data from a 10X experiment folder and constructs an... |
| import.ace.from.10X.h5 | A simple wrapper to import data from a 10X experiment folder... |
| import.ace.from.CDS | Constructs an 'SingleCellExeriment' object from CDS format in... |
| import.ace.from.counts | Constructs an 'SingleCellExeriment' object from count matrix,... |
| import.ace.from.loom | Constructs an 'SingleCellExeriment' object from AnnData This... |
| import.ace.from.Seurat | Constructs an 'SingleCellExeriment' object from a Seurat... |
| import.ace.from.table | Constructs an 'SingleCellExeriment' object from a full count... |
| rowEmbeddings | Get row embeddings |
| rowEmbeddings-set | Set row embeddings |
| rowMapMeta | Get rowMapMeta |
| rowMapMeta-set | Set rowMapMeta |
| rowMaps | Get rowMaps |
| rowMaps-set | Set rowMaps |
| rowMapTypes | Get rowMapTypes |
| rowMapTypes-set | Set rowMapTypes |
| rowNets | Get rowNets |
| rowNets-set | Set rowNets |
| rowReductions | Get row reductions |
| rowReductions-set | Set row reductions |
| show-ACTIONetExperiment-method | Shows slots of ACTIONetExperiment (ACE) object |
| sizeFactors | Set column-associated size factors |
| sub-ACTIONetExperiment-ANY-ANY-ANY-method | Subsets rows/columns of an ACTIONetExperiment (ACE) object |
