db_download: Obtain Patient Notes

In simon-hans/CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Obtain Patient Notes

Description

Downloads the notes for one patient. If there are missing fields, those are created with NA values inserted.

Usage

db_download(
  uri_fun,
  user,
  password,
  host,
  replica_set,
  port,
  database,
  patient_id
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
replica_set	MongoDB replica set, if indicated.
port	MongoDB port.
database	MongoDB database name.
patient_id	Patient ID for which notes are being requested.

Value

Dataframe of full notes and/or note parts with associated metadata.

simon-hans/CEDARS documentation built on Feb. 14, 2024, 3:16 a.m.