download_filtered_tags: Download Notes Metadata Summary

In simon-hans/CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Download Notes Metadata Summary

Description

Downloads text_tag_x info for the metadata tags, along with "include" and/or "exclude" criteria in the core CEDARS search query.

Usage

download_filtered_tags(
  uri_fun,
  user,
  password,
  host,
  replica_set,
  port,
  database,
  eval_query = TRUE
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB server host.
replica_set	MongoDB replica set, if indicated.
port	MongoDB port.
database	MongoDB database name.
eval_query	Should tags be evaluated against stored CEDARS query?

Value

List containing one dataframe per text_tag_x of interest, indicating selected status. Can take time to download for large datasets.

Examples

## Not run: 
download_filtered_tags(uri_fun = mongo_uri_standard, user = 'John',
password = 'db_password_1234', host = 'server1234', replica_set = NA, port = NA,
database = 'TEST_PROJECT')

## End(Not run)

simon-hans/CEDARS documentation built on Feb. 14, 2024, 3:16 a.m.